Variant report
| Variant | rs250501 |
|---|---|
| Chromosome Location | chr5:15991777-15991778 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10051749 | 0.89[ASN][1000 genomes] |
| rs10055882 | 0.82[ASN][1000 genomes] |
| rs10076986 | 0.90[ASN][1000 genomes] |
| rs11133826 | 0.90[ASN][1000 genomes] |
| rs12655516 | 0.91[ASN][1000 genomes] |
| rs1393266 | 0.85[AFR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1502027 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs168747 | 0.91[ASN][1000 genomes] |
| rs181833 | 0.87[ASN][1000 genomes] |
| rs250489 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs250496 | 0.87[ASN][1000 genomes] |
| rs250497 | 0.87[ASN][1000 genomes] |
| rs250498 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs250500 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs250503 | 0.91[ASN][1000 genomes] |
| rs250504 | 0.91[ASN][1000 genomes] |
| rs250505 | 0.89[ASN][1000 genomes] |
| rs2599503 | 0.91[ASN][1000 genomes] |
| rs32824 | 0.96[ASN][1000 genomes] |
| rs32825 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs32827 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs32828 | 0.90[ASN][1000 genomes] |
| rs32829 | 0.91[ASN][1000 genomes] |
| rs32830 | 0.91[ASN][1000 genomes] |
| rs4701645 | 0.89[ASN][1000 genomes] |
| rs4701646 | 0.89[ASN][1000 genomes] |
| rs4702120 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830216 | chr5:15860662-16060420 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv427712 | chr5:15883439-16055856 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:15991000-15992400 | ZNF genes & repeats | Liver | Liver |
