Variant report

Variant	rs2508199
Chromosome Location	chr11:71963553-71963554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71933747..71936558-chr11:71962323..71967146,4	K562	blood:
2	chr11:71935078..71937662-chr11:71961584..71963637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11548491	0.98[ASN][1000 genomes]
rs12416741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12418533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1783632	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1784257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2276046	0.98[ASN][1000 genomes]
rs2508201	1.00[CHB][hapmap]
rs2508204	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2508861	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2508865	1.00[CHB][hapmap]
rs2508866	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3900852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs472837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs477354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs487288	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs506041	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs527905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs55723921	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56229279	0.84[ASN][1000 genomes]
rs56333926	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57464210	0.84[EUR][1000 genomes]
rs57669200	0.84[EUR][1000 genomes]
rs58489620	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs590732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59427981	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59509230	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59980097	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60024067	0.90[EUR][1000 genomes]
rs61736312	0.97[ASN][1000 genomes]
rs650834	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs70940824	0.94[ASN][1000 genomes]
rs7108974	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7110260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73528892	0.84[ASN][1000 genomes]
rs7952074	1.00[CHB][hapmap]
rs9886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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