Variant report

Variant	rs2508201
Chromosome Location	chr11:71995639-71995640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71990662..71992301-chr11:71993372..71996050,2	K562	blood:

Variant related genes	Relation type
ENSG00000213365	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10501410	0.88[CEU][hapmap]
rs11548491	0.81[ASN][1000 genomes]
rs12416741	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs12416804	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12418533	1.00[CHB][hapmap]
rs12418637	0.88[CEU][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.83[YRI][hapmap]
rs12421674	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17162126	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1783632	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1784257	0.81[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs2276046	0.81[ASN][1000 genomes]
rs2508199	1.00[CHB][hapmap]
rs2508204	0.90[ASN][1000 genomes]
rs2508861	0.94[ASN][1000 genomes]
rs2508863	0.82[ASN][1000 genomes]
rs2508865	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508866	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36049191	0.87[ASN][1000 genomes]
rs3750906	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3900852	1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs472837	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs474629	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs477354	1.00[CHB][hapmap]
rs487288	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs504217	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs506041	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs527905	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs55721826	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55723921	0.94[ASN][1000 genomes]
rs56076328	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56171963	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56229279	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56333926	0.94[ASN][1000 genomes]
rs57276029	0.87[ASN][1000 genomes]
rs57291879	0.87[ASN][1000 genomes]
rs57464210	0.87[ASN][1000 genomes]
rs57614093	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57669200	0.90[ASN][1000 genomes]
rs58044536	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58306819	0.87[ASN][1000 genomes]
rs58489620	0.94[ASN][1000 genomes]
rs58753751	0.87[ASN][1000 genomes]
rs58945323	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs590732	0.81[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs59427981	0.89[ASN][1000 genomes]
rs59509230	0.86[ASN][1000 genomes]
rs59612321	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59980097	0.86[ASN][1000 genomes]
rs60024067	0.90[ASN][1000 genomes]
rs60849224	0.87[ASN][1000 genomes]
rs61036532	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61563240	0.87[ASN][1000 genomes]
rs650834	0.93[ASN][1000 genomes]
rs680660	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs70940824	0.85[ASN][1000 genomes]
rs7108974	0.94[ASN][1000 genomes]
rs7110260	1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.85[ASN][1000 genomes]
rs7116854	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130652	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528886	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528892	0.94[ASN][1000 genomes]
rs73528897	0.87[ASN][1000 genomes]
rs73530718	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73530724	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7940062	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7952074	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9886	1.00[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2508201	FOLR3	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71993800-72004800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:71994000-72004200	Weak transcription	HSMMtube	muscle
3	chr11:71994000-72004600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:71995400-72003200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:71995600-72028000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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