Variant report

Variant	rs2511029
Chromosome Location	chr11:57030635-57030636
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10896595	0.87[ASN][1000 genomes]
rs10896596	0.93[EUR][1000 genomes]
rs10896597	0.95[ASN][1000 genomes]
rs10896599	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896601	0.82[EUR][1000 genomes]
rs11228968	0.89[ASN][1000 genomes]
rs11228971	0.93[EUR][1000 genomes]
rs11228975	0.89[ASN][1000 genomes]
rs11228976	0.89[ASN][1000 genomes]
rs11228978	0.89[ASN][1000 genomes]
rs11228980	0.89[ASN][1000 genomes]
rs11228982	0.83[ASN][1000 genomes]
rs11228984	0.87[ASN][1000 genomes]
rs11228985	0.87[ASN][1000 genomes]
rs11602501	0.82[EUR][1000 genomes]
rs11604560	0.89[ASN][1000 genomes]
rs11605053	0.87[ASN][1000 genomes]
rs11607817	0.89[ASN][1000 genomes]
rs12419065	0.81[ASN][1000 genomes]
rs12421633	0.89[ASN][1000 genomes]
rs12421755	0.89[ASN][1000 genomes]
rs12792781	0.87[ASN][1000 genomes]
rs12797769	0.88[ASN][1000 genomes]
rs17572970	0.89[ASN][1000 genomes]
rs17573746	0.84[EUR][1000 genomes]
rs17651610	0.89[ASN][1000 genomes]
rs17652078	0.89[ASN][1000 genomes]
rs1892963	0.89[ASN][1000 genomes]
rs1892964	0.95[ASN][1000 genomes]
rs1939489	0.87[ASN][1000 genomes]
rs1939495	0.89[ASN][1000 genomes]
rs1939496	0.86[EUR][1000 genomes]
rs2155230	0.89[ASN][1000 genomes]
rs2155231	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226613	0.86[ASN][1000 genomes]
rs2511026	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2511030	0.95[ASN][1000 genomes]
rs2846042	0.95[ASN][1000 genomes]
rs2846049	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2846050	0.95[ASN][1000 genomes]
rs2846051	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2851722	0.95[ASN][1000 genomes]
rs35610294	0.88[ASN][1000 genomes]
rs3935068	0.85[ASN][1000 genomes]
rs4384399	0.89[ASN][1000 genomes]
rs4565915	0.87[ASN][1000 genomes]
rs479949	0.95[ASN][1000 genomes]
rs4938855	0.89[ASN][1000 genomes]
rs4938857	0.89[ASN][1000 genomes]
rs4938859	0.88[ASN][1000 genomes]
rs4938861	0.84[ASN][1000 genomes]
rs4939129	0.84[EUR][1000 genomes]
rs4939131	0.83[EUR][1000 genomes]
rs4939132	0.86[ASN][1000 genomes]
rs499318	0.95[ASN][1000 genomes]
rs5012051	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs519277	0.95[ASN][1000 genomes]
rs522656	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528101	0.95[ASN][1000 genomes]
rs58295319	0.81[ASN][1000 genomes]
rs590240	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599947	1.00[ASN][1000 genomes]
rs625565	0.95[ASN][1000 genomes]
rs652016	0.92[ASN][1000 genomes]
rs654635	0.95[ASN][1000 genomes]
rs6591413	0.89[ASN][1000 genomes]
rs6591415	0.89[ASN][1000 genomes]
rs6591416	0.87[ASN][1000 genomes]
rs6591417	0.87[ASN][1000 genomes]
rs7102963	0.89[ASN][1000 genomes]
rs7120644	0.89[ASN][1000 genomes]
rs7128371	0.87[ASN][1000 genomes]
rs7130252	0.89[ASN][1000 genomes]
rs72921992	0.86[ASN][1000 genomes]
rs7931298	0.92[EUR][1000 genomes]
rs7935236	0.83[ASN][1000 genomes]
rs7936545	0.91[EUR][1000 genomes]
rs7948723	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57029200-57030800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:57029400-57031600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:57029400-57031600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:57029800-57030800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:57030400-57030800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:57030400-57031000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:57030400-57031400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:57030400-57031600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:57030600-57030800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:57030600-57031000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:57030600-57031200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:57030600-57036800	Weak transcription	H9 Cell Line	embryonic stem cell

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