Variant report

Variant	rs2511143
Chromosome Location	chr11:56313271-56313272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:56313120-56313316	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
OR5M11	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10400288	0.94[ASN][1000 genomes]
rs10736676	0.96[YRI][hapmap]
rs10736677	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10736678	0.87[YRI][hapmap]
rs10750820	0.94[ASN][1000 genomes]
rs10792038	1.00[YRI][hapmap]
rs10792039	0.96[YRI][hapmap]
rs10792040	0.97[ASN][1000 genomes]
rs10792043	1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896480	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11228212	0.94[ASN][1000 genomes]
rs11228676	1.00[YRI][hapmap]
rs11228684	0.88[ASN][1000 genomes]
rs11228686	0.88[ASN][1000 genomes]
rs11228687	0.88[ASN][1000 genomes]
rs11228693	0.82[ASN][1000 genomes]
rs11228694	0.82[ASN][1000 genomes]
rs11228698	0.82[ASN][1000 genomes]
rs11228701	0.82[ASN][1000 genomes]
rs11228706	0.82[ASN][1000 genomes]
rs11228708	0.82[ASN][1000 genomes]
rs12222989	0.82[ASN][1000 genomes]
rs12418150	0.91[ASN][1000 genomes]
rs12418301	0.88[ASN][1000 genomes]
rs1605924	0.88[ASN][1000 genomes]
rs17150739	1.00[ASN][1000 genomes]
rs1945196	1.00[ASN][1000 genomes]
rs1945210	0.94[ASN][1000 genomes]
rs1945282	0.87[YRI][hapmap]
rs2202932	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2865516	0.82[ASN][1000 genomes]
rs3938998	0.94[ASN][1000 genomes]
rs4500505	1.00[ASN][1000 genomes]
rs4939034	0.88[ASN][1000 genomes]
rs4939035	0.88[ASN][1000 genomes]
rs4939043	0.94[ASN][1000 genomes]
rs4939061	0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4939065	0.95[YRI][hapmap]
rs4939066	0.95[YRI][hapmap]
rs583216	0.95[YRI][hapmap]
rs583589	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs584608	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs588805	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592744	1.00[ASN][1000 genomes]
rs596212	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs597680	0.96[YRI][hapmap]
rs600187	0.96[YRI][hapmap]
rs611397	0.96[YRI][hapmap]
rs61710550	0.82[ASN][1000 genomes]
rs628524	0.95[YRI][hapmap]
rs637912	1.00[ASN][1000 genomes]
rs642630	1.00[ASN][1000 genomes]
rs643384	1.00[ASN][1000 genomes]
rs645351	0.95[YRI][hapmap]
rs646286	0.96[YRI][hapmap]
rs654634	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs655779	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656565	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6591381	0.85[ASN][1000 genomes]
rs674431	1.00[YRI][hapmap]
rs676901	1.00[ASN][1000 genomes]
rs688832	1.00[YRI][hapmap]
rs7924528	0.96[YRI][hapmap]
rs7939886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
2	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv971949	chr11:56126625-56344170	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv468576	chr11:56299930-56420029	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv555099	chr11:56299930-56420029	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56312800-56313400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links