Variant report

Variant	rs2515225
Chromosome Location	chr8:99840274-99840275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99838808..99842623-chr8:99842733..99845711,4	MCF-7	breast:
2	chr8:99834688..99837414-chr8:99839834..99842522,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12679734	0.88[EUR][1000 genomes]
rs1447245	0.80[EUR][1000 genomes]
rs1476181	0.80[EUR][1000 genomes]
rs1961744	0.95[EUR][1000 genomes]
rs2028975	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442010	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2442011	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442013	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442015	0.97[ASN][1000 genomes]
rs2515214	0.81[EUR][1000 genomes]
rs2515215	0.95[ASN][1000 genomes]
rs2515216	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515219	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515221	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2515224	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2922066	0.81[EUR][1000 genomes]
rs2922073	0.96[EUR][1000 genomes]
rs2922074	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2922075	0.83[EUR][1000 genomes]
rs2922076	0.95[EUR][1000 genomes]
rs2922078	0.83[EUR][1000 genomes]
rs2922081	0.83[EUR][1000 genomes]
rs2922084	0.81[EUR][1000 genomes]
rs3019290	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3019291	0.88[EUR][1000 genomes]
rs3019293	0.85[EUR][1000 genomes]
rs4255105	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99837800-99848600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:99838600-99846800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:99838800-99842400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:99838800-99843600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:99838800-99844000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:99838800-99844000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:99838800-99845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:99838800-99846400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:99838800-99846600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:99838800-99847600	Weak transcription	Fetal Intestine Large	intestine
11	chr8:99838800-99862800	Weak transcription	Ovary	ovary
12	chr8:99839000-99844800	Weak transcription	Placenta	Placenta
13	chr8:99839000-99845400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:99839000-99846400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:99839000-99846600	Weak transcription	HSMMtube	muscle
16	chr8:99839000-99846600	Weak transcription	NHDF-Ad	bronchial

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