Variant report

Variant	rs251535
Chromosome Location	chr5:97933671-97933672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:97927404..97929282-chr5:97932064..97934664,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10038701	0.84[ASN][1000 genomes]
rs1345571	0.82[ASN][1000 genomes]
rs1363584	0.82[ASN][1000 genomes]
rs1421632	0.82[ASN][1000 genomes]
rs152954	0.85[ASN][1000 genomes]
rs152955	0.85[ASN][1000 genomes]
rs152956	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs152957	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs152963	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs152967	0.82[ASN][1000 genomes]
rs1559132	0.84[ASN][1000 genomes]
rs1592734	0.84[ASN][1000 genomes]
rs171528	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs181854	0.85[ASN][1000 genomes]
rs1820766	0.84[ASN][1000 genomes]
rs193500	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052447	0.82[ASN][1000 genomes]
rs2431067	0.85[ASN][1000 genomes]
rs251481	0.85[ASN][1000 genomes]
rs251482	0.85[ASN][1000 genomes]
rs251533	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs25741	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25742	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25743	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs25744	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs27029	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27030	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27031	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs27738	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27786	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27870	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27971	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs29661	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs29670	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29733	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29734	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29735	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29736	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs29770	0.87[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs29772	0.87[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs29773	0.83[ASN][1000 genomes]
rs3099443	0.88[ASN][1000 genomes]
rs36759	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36760	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36761	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36762	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36763	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36765	0.84[ASN][1000 genomes]
rs3860804	0.81[CEU][hapmap];0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs40263	0.83[ASN][1000 genomes]
rs457020	0.85[ASN][1000 genomes]
rs460723	0.85[ASN][1000 genomes]
rs463369	0.85[ASN][1000 genomes]
rs466058	0.85[ASN][1000 genomes]
rs466259	0.85[ASN][1000 genomes]
rs467763	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs467853	0.85[ASN][1000 genomes]
rs468674	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs469191	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs469328	0.85[ASN][1000 genomes]
rs4703113	0.84[ASN][1000 genomes]
rs4703114	0.84[ASN][1000 genomes]
rs4703120	0.84[ASN][1000 genomes]
rs622487	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651434	0.85[ASN][1000 genomes]
rs6867574	0.82[ASN][1000 genomes]
rs6893541	0.82[CEU][hapmap];0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs765576	0.82[ASN][1000 genomes]
rs765577	0.82[ASN][1000 genomes]
rs7719420	0.82[ASN][1000 genomes]
rs7724726	0.82[ASN][1000 genomes]
rs929739	0.82[ASN][1000 genomes]
rs985151	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv999288	chr5:97926959-97940484	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2763884	chr5:97930840-97935770	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv508372	chr5:97931331-97948860	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3469591	chr5:97932997-97939963	Enhancers Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469589	chr5:97933007-97939951	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3469590	chr5:97933039-97939910	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3469592	chr5:97933039-97939910	ZNF genes & repeats Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv823153	chr5:97933043-97935372	Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv17657	chr5:97933161-97939819	Strong transcription Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1808514	chr5:97933671-97935503	ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1826758	chr5:97933671-97935503	ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1829322	chr5:97933671-97935503	ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv441957	chr5:97933671-97935503	Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv1827151	chr5:97933671-97935770	ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97932400-97933800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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