Variant report

Variant	rs2515663
Chromosome Location	chr1:152085505-152085506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:152083017..152085583-chr1:152100837..152102979,2	MCF-7	breast:
2	chr1:152082811..152085581-chr1:152092472..152094632,2	MCF-7	breast:
3	chr1:152083046..152085813-chr1:152103196..152106111,3	MCF-7	breast:
4	chr1:152058557..152062058-chr1:152082903..152085603,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182898	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1496039	1.00[AFR][1000 genomes]
rs2496246	1.00[AFR][1000 genomes]
rs2496247	1.00[AFR][1000 genomes]
rs2496250	1.00[CHD][hapmap]
rs2935207	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152080000-152085600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:152082800-152085600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr1:152083800-152085600	Bivalent Enhancer	Fetal Heart	heart
4	chr1:152084200-152085600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
5	chr1:152084200-152085600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:152084400-152085600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr1:152084600-152085600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
8	chr1:152084800-152085600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr1:152084800-152085600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
10	chr1:152084800-152085600	Bivalent/Poised TSS	Brain Angular Gyrus	brain
11	chr1:152084800-152085600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
12	chr1:152085000-152085600	Bivalent Enhancer	HUVEC	blood vessel
13	chr1:152085000-152085600	Bivalent Enhancer	Osteobl	bone
14	chr1:152085200-152085600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
15	chr1:152085200-152085600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:152085200-152085600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr1:152085200-152085600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
18	chr1:152085200-152085600	Bivalent Enhancer	Colon Smooth Muscle	Colon
19	chr1:152085200-152085600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr1:152085200-152085600	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr1:152085200-152085600	Bivalent Enhancer	Fetal Stomach	stomach
22	chr1:152085200-152085800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
23	chr1:152085200-152086000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:152085200-152086000	Bivalent Enhancer	Fetal Intestine Large	intestine
25	chr1:152085400-152085600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
26	chr1:152085400-152085600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
28	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
29	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
30	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
32	chr1:152085400-152085600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
33	chr1:152085400-152085600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
34	chr1:152085400-152085600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:152085400-152085600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr1:152085400-152085600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:152085400-152085600	Bivalent Enhancer	Brain Germinal Matrix	brain
38	chr1:152085400-152085600	Bivalent Enhancer	Fetal Brain Male	brain
39	chr1:152085400-152085600	Bivalent Enhancer	Fetal Lung	lung
40	chr1:152085400-152085600	Bivalent Enhancer	Fetal Thymus	thymus
41	chr1:152085400-152085600	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
42	chr1:152085400-152085600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
43	chr1:152085400-152085600	Bivalent Enhancer	Thymus	Thymus
44	chr1:152085400-152085600	Bivalent Enhancer	HMEC	breast
45	chr1:152085400-152085600	Bivalent/Poised TSS	HSMM	muscle
46	chr1:152085400-152085600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
47	chr1:152085400-152085800	Bivalent Enhancer	Primary T cells from cord blood	blood
48	chr1:152085400-152085800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr1:152085400-152085800	Bivalent Enhancer	Fetal Kidney	kidney
50	chr1:152085400-152085800	Bivalent Enhancer	GM12878-XiMat	blood

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