Variant report

Variant	rs2516747
Chromosome Location	chr14:106144684-106144685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10144746	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10146949	0.87[EUR][1000 genomes]
rs12896746	0.89[AFR][1000 genomes]
rs2516751	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2516752	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2516755	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2855788	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34678053	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61984791	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61986171	0.87[AFR][1000 genomes]
rs7154333	0.84[EUR][1000 genomes]
rs8015375	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2516747	IGHJ6	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106141600-106149600	Weak transcription	Spleen	Spleen
2	chr14:106143000-106146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:106144400-106145000	Enhancers	GM12878-XiMat	blood
4	chr14:106144400-106146200	Enhancers	Primary B cells from cord blood	blood
5	chr14:106144600-106145600	Enhancers	Primary B cells from peripheral blood	blood
6	chr14:106144600-106145600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:106144600-106149400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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