Variant report
| Variant | rs2518174 |
|---|---|
| Chromosome Location | chr6:101799965-101799966 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:101798733..101801184-chr6:101804475..101806686,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1338156 | 0.94[AFR][1000 genomes] |
| rs1415946 | 0.86[YRI][hapmap] |
| rs17061890 | 0.86[ASN][1000 genomes] |
| rs1948050 | 0.85[EUR][1000 genomes] |
| rs2518173 | 0.97[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2518177 | 0.94[AFR][1000 genomes] |
| rs2518319 | 0.97[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2518320 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2579928 | 0.91[AFR][1000 genomes] |
| rs2579930 | 0.92[AFR][1000 genomes] |
| rs2629982 | 0.96[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2629983 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs283182 | 0.82[AFR][1000 genomes] |
| rs283211 | 0.82[AFR][1000 genomes] |
| rs283227 | 0.82[AFR][1000 genomes] |
| rs283229 | 0.82[AFR][1000 genomes] |
| rs2852508 | 0.86[YRI][hapmap] |
| rs2852509 | 0.85[YRI][hapmap] |
| rs2852512 | 0.86[YRI][hapmap] |
| rs4103516 | 0.81[AFR][1000 genomes] |
| rs499194 | 0.83[ASN][1000 genomes] |
| rs507673 | 0.86[ASN][1000 genomes] |
| rs523813 | 0.83[ASN][1000 genomes] |
| rs566507 | 0.83[EUR][1000 genomes] |
| rs599826 | 0.83[ASN][1000 genomes] |
| rs614557 | 0.86[ASN][1000 genomes] |
| rs689383 | 0.83[ASN][1000 genomes] |
| rs689402 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020400 | chr6:101172705-101981665 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv538390 | chr6:101172705-101981665 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:101799200-101800000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
