Variant report

Variant	rs2518235
Chromosome Location	chr6:101934446-101934447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1415946	1.00[JPT][hapmap]
rs1475916	1.00[JPT][hapmap]
rs2518226	1.00[JPT][hapmap]
rs2518228	1.00[JPT][hapmap]
rs2518231	1.00[JPT][hapmap]
rs2518234	1.00[JPT][hapmap]
rs2518237	0.80[CEU][hapmap]
rs2518238	1.00[JPT][hapmap]
rs2518249	1.00[JPT][hapmap]
rs2579933	1.00[JPT][hapmap]
rs2579934	1.00[JPT][hapmap]
rs2579945	0.83[CEU][hapmap]
rs2788276	1.00[JPT][hapmap]
rs2852508	1.00[JPT][hapmap]
rs2852532	1.00[JPT][hapmap]
rs3811080	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886460	chr6:101890395-101951502	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv886461	chr6:101916765-101948788	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886462	chr6:101916765-101951502	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604277	chr6:101922699-101941632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886463	chr6:101922699-101951502	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886464	chr6:101922699-101962940	Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv5413	chr6:101931887-101958981	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv437519	chr6:101932126-101951502	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604278	chr6:101933087-101938966	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3489887	chr6:101933159-101940857	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3473103	chr6:101933259-101939557	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv511908	chr6:101933359-101939211	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604279	chr6:101933529-101937255	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv604280	chr6:101933529-101938167	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604281	chr6:101933529-101938454	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv604282	chr6:101933529-101938966	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv511357	chr6:101933529-101939743	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3489883	chr6:101933609-101940032	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv7945	chr6:101933949-101940219	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3489889	chr6:101934121-101939154	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3489891	chr6:101934131-101940518	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv6416	chr6:101934306-101939234	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3473104	chr6:101934422-101939123	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3489888	chr6:101934441-101939163	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101933000-101934600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:101933200-101934600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:101933400-101934600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:101933400-101934800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:101933800-101934600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:101933800-101934600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:101933800-101934600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:101934000-101934600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:101934000-101935000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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