Variant report

Variant	rs2518262
Chromosome Location	chr6:101981808-101981809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1475917	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs2518251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518261	0.96[YRI][hapmap]
rs9373614	0.81[JPT][hapmap]
rs9386283	0.81[JPT][hapmap]
rs9386284	0.81[JPT][hapmap]
rs9404115	0.81[JPT][hapmap]
rs9404119	0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101978800-101982600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101980000-101983800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:101981800-101982400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:101981800-101982600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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