Variant report

Variant	rs2518949
Chromosome Location	chr7:126547748-126547749
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1003036	1.00[CEU][hapmap]
rs1008274	0.82[ASN][1000 genomes]
rs1121874	0.96[CEU][hapmap]
rs1154324	0.96[CEU][hapmap]
rs1154325	0.96[CEU][hapmap]
rs1155597	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1155656	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1204563	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1204567	1.00[CEU][hapmap]
rs1204569	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1204579	1.00[CEU][hapmap]
rs1204583	1.00[CEU][hapmap]
rs1204588	0.96[CEU][hapmap]
rs1204593	0.96[CEU][hapmap]
rs1204594	0.96[CEU][hapmap]
rs1211384	0.96[CEU][hapmap]
rs1419465	1.00[CEU][hapmap]
rs1548766	1.00[CEU][hapmap]
rs17861376	0.96[CEU][hapmap]
rs1833069	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2067052	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2072416	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2215565	0.90[EUR][1000 genomes]
rs2237774	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2518954	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518955	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2535926	1.00[CEU][hapmap]
rs2535932	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2535934	0.90[EUR][1000 genomes]
rs2535936	0.90[EUR][1000 genomes]
rs2535938	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2535943	0.93[EUR][1000 genomes]
rs2535944	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6975379	0.96[CEU][hapmap]
rs992169	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1849599	chr7:126507755-126557892	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv981575	chr7:126520557-126563439	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv16629	chr7:126531997-126552956	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv5940	chr7:126535731-126580660	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126547400-126549000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:126547600-126547800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:126547600-126548000	Active TSS	Brain Anterior Caudate	brain
4	chr7:126547600-126548000	Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links