Variant report

Variant	rs2518954
Chromosome Location	chr7:126571401-126571402
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1003036	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1008274	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1010517	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10234281	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10236120	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10236204	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10236227	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10265258	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs10275501	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10487463	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1121874	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11496163	0.90[ASN][1000 genomes]
rs1154324	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1154325	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1155597	0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1155656	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563513	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs11563801	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1204563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1204567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1204569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1204579	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1204583	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1204588	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1204593	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1204594	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1211384	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12164089	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1361965	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1361968	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1361975	0.84[ASN][1000 genomes]
rs1419438	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1419465	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1419468	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1419469	0.91[ASN][1000 genomes]
rs1419470	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs1419471	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1548766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1582255	0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs17861376	0.95[CEU][hapmap]
rs1833069	0.85[EUR][1000 genomes]
rs2022072	0.88[JPT][hapmap]
rs2067052	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2072416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106188	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2188188	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2215565	0.87[EUR][1000 genomes]
rs2237774	0.88[EUR][1000 genomes]
rs2237776	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2518949	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2535926	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2535932	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs2535933	0.82[JPT][hapmap]
rs2535934	0.87[EUR][1000 genomes]
rs2535936	0.87[EUR][1000 genomes]
rs2535938	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes]
rs2535939	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2535943	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2535944	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808136	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs3808142	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4728057	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs4728060	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6950713	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6975379	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs992169	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv5940	chr7:126535731-126580660	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv608378	chr7:126570120-126597132	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126571000-126576600	Weak transcription	Pancreas	Pancrea

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