Variant report

Variant	rs2527052
Chromosome Location	chr7:147740628-147740629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147734255..147736925-chr7:147737815..147740650,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10250079	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10253458	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10264877	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10272032	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10280388	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10485848	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10952721	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10952722	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10952723	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10952725	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10952726	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10952727	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11764815	0.82[AMR][1000 genomes]
rs12531913	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667149	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12671605	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12673714	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12674206	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12703988	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12703990	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12703991	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17546472	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527047	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2527054	0.97[EUR][1000 genomes]
rs2527055	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2527060	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2527066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2707558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707565	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707582	0.92[ASN][1000 genomes]
rs2710137	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2710143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2710144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4262258	0.82[AMR][1000 genomes]
rs4571660	0.82[AMR][1000 genomes]
rs4726904	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4726905	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4726906	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4726907	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4726913	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4726914	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4726916	0.82[ASN][1000 genomes]
rs6960266	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6965599	0.82[AMR][1000 genomes]
rs6979577	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs757697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797264	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147738400-147748000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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