Variant report

Variant	rs2529117
Chromosome Location	chr7:101900122-101900123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101899520..101901053-chr7:101928212..101931086,2	MCF-7	breast:
2	chr7:101892721..101895206-chr7:101897644..101900995,4	K562	blood:
3	chr1:107597848..107599875-chr7:101900045..101902997,2	MCF-7	breast:
4	chr7:101892721..101894355-chr7:101897644..101900464,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SH2B2-2	chr7:101898320-101901513	NONHSAT122484

Variant related genes	Relation type
ENSG00000198890	Chromatin interaction
ENSG00000160999	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2021738	0.91[ASN][1000 genomes]
rs2021739	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2529115	0.88[EUR][1000 genomes]
rs2529116	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2694151	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2694152	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2694155	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101846000-101904200	Weak transcription	Stomach Mucosa	stomach
2	chr7:101865000-101904200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:101866800-101907600	Weak transcription	NH-A	brain
4	chr7:101867800-101900400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:101872400-101904000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:101873600-101904000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:101883000-101904000	Weak transcription	Fetal Brain Female	brain
8	chr7:101884200-101904000	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:101885200-101901800	Weak transcription	A549	lung
10	chr7:101886200-101904200	Weak transcription	Brain Substantia Nigra	brain
11	chr7:101886200-101906200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:101888400-101901000	Weak transcription	Hela-S3	cervix
13	chr7:101888800-101907800	Weak transcription	Fetal Lung	lung
14	chr7:101892800-101901800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:101892800-101928000	Weak transcription	Esophagus	oesophagus
16	chr7:101892800-101928400	Weak transcription	Right Ventricle	heart
17	chr7:101893800-101903000	Weak transcription	Aorta	Aorta
18	chr7:101893800-101913400	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:101894000-101900200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:101894000-101902000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:101894000-101902000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:101894000-101904000	Weak transcription	Left Ventricle	heart
23	chr7:101894000-101908000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:101894000-101911800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:101894000-101916800	Weak transcription	Lung	lung
26	chr7:101894200-101900400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:101894200-101901400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr7:101894200-101904000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:101896000-101901600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:101896000-101904000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:101897400-101900600	Weak transcription	Liver	Liver
32	chr7:101897400-101901600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:101897400-101901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:101897400-101907600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:101897400-101915400	Weak transcription	Pancreas	Pancrea
36	chr7:101897600-101900800	Weak transcription	Placenta	Placenta
37	chr7:101897600-101901600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:101897600-101901600	Weak transcription	Thymus	Thymus
39	chr7:101897600-101928000	Weak transcription	Primary T cells from cord blood	blood
40	chr7:101897800-101900200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:101897800-101907800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:101898000-101901600	Weak transcription	Dnd41	blood
43	chr7:101898000-101901800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:101898000-101904200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr7:101898000-101907600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr7:101898000-101907600	Weak transcription	Spleen	Spleen
47	chr7:101898000-101928200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:101898200-101904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:101898200-101907600	Weak transcription	Gastric	stomach
50	chr7:101898200-101922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links