The 2.0 version of rSNPBase

Variant report

Variant rs253326
Chromosome Location chr5:16830127-16830128
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16818000-16832800 Weak transcription Duodenum Mucosa Duodenum
2 chr5:16818000-16846600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr5:16820000-16841600 Weak transcription Fetal Kidney kidney
4 chr5:16820200-16842600 Weak transcription HMEC breast
5 chr5:16820400-16845400 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr5:16820600-16838800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:16820600-16845000 Weak transcription NH-A brain
8 chr5:16820800-16834000 Weak transcription Osteobl bone
9 chr5:16820800-16843000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr5:16820800-16855200 Weak transcription HSMM muscle
11 chr5:16823600-16835800 Weak transcription HSMMtube muscle
12 chr5:16823600-16841600 Weak transcription HUVEC blood vessel
13 chr5:16825400-16842800 Weak transcription NHLF lung
14 chr5:16827000-16831800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr5:16827000-16835600 Weak transcription Ovary ovary
16 chr5:16827000-16838400 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr5:16827200-16841400 Weak transcription Fetal Stomach stomach
18 chr5:16827400-16838000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr5:16828000-16852400 Weak transcription NHDF-Ad bronchial
20 chr5:16828200-16830800 Weak transcription Esophagus oesophagus
21 chr5:16828200-16836200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr5:16828200-16836200 Weak transcription Fetal Lung lung
23 chr5:16828400-16831000 Weak transcription Fetal Muscle Trunk muscle
24 chr5:16828400-16834000 Weak transcription Pancreas Pancrea
25 chr5:16828400-16834200 Weak transcription Gastric stomach
26 chr5:16828400-16842800 Weak transcription NHEK skin
27 chr5:16828600-16841200 Weak transcription Muscle Satellite Cultured Cells --
28 chr5:16829200-16830400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr5:16829200-16833200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr5:16829200-16833400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:16829400-16830800 Weak transcription A549 lung
32 chr5:16829400-16842400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr5:16829400-16855800 Weak transcription Fetal Intestine Small intestine
34 chr5:16829600-16834000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr5:16829800-16832200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr5:16829800-16834200 Weak transcription Spleen Spleen
37 chr5:16829800-16840200 Weak transcription Lung lung
38 chr5:16829800-16841600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr5:16829800-16841800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr5:16830000-16831400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr5:16830000-16832800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr5:16830000-16841600 Weak transcription Breast Myoepithelial Primary Cells Breast
43 chr5:16830000-16842400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015