Variant report

Variant	rs2535932
Chromosome Location	chr7:126521189-126521190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1003036	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1008274	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1010517	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10227752	0.83[JPT][hapmap]
rs10234281	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs10236120	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10236204	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10236227	0.85[CHB][hapmap]
rs10265258	0.83[JPT][hapmap]
rs10275501	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs10487463	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1121874	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1154324	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs1154325	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap]
rs1155597	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs1155656	0.88[EUR][1000 genomes]
rs11563513	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11563801	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1204563	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs1204567	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1204569	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes]
rs1204579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1204583	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap]
rs1204588	0.96[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap]
rs1204593	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs1204594	0.96[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap]
rs1211384	0.96[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap]
rs12164089	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12669064	0.82[JPT][hapmap]
rs1361965	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs1361968	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1361976	0.83[JPT][hapmap]
rs1419438	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs1419465	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1419468	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1419470	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs1419471	0.88[JPT][hapmap]
rs1548766	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1582255	0.81[CHB][hapmap]
rs1592372	0.83[JPT][hapmap]
rs16871742	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs17861376	0.96[CEU][hapmap]
rs1833069	0.89[EUR][1000 genomes]
rs2022072	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs2067052	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs2072416	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes]
rs2106188	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2188188	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs2215565	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237774	0.93[EUR][1000 genomes]
rs2237776	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2262068	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2518949	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2518954	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs2518955	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2535926	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2535933	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2535934	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535936	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2535938	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs2535939	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs2535943	0.87[EUR][1000 genomes]
rs2535944	0.87[EUR][1000 genomes]
rs3808136	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs3808142	0.88[JPT][hapmap]
rs4326328	0.80[JPT][hapmap]
rs4728057	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs6950713	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs6975379	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs992169	0.83[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1849599	chr7:126507755-126557892	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv8211	chr7:126513183-126533173	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1849801	chr7:126513882-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv10276	chr7:126514673-126533162	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1846203	chr7:126514725-126531028	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1832206	chr7:126514725-126533360	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1812850	chr7:126514725-126536800	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1800137	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1815126	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1826739	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1794204	chr7:126519897-126530828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1812181	chr7:126519897-126530828	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv981575	chr7:126520557-126563439	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126517000-126521400	Weak transcription	Hela-S3	cervix

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