Variant report

Variant	rs2535936
Chromosome Location	chr7:126523933-126523934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1155597	0.84[EUR][1000 genomes]
rs1155656	0.87[EUR][1000 genomes]
rs1204563	0.86[EUR][1000 genomes]
rs1204569	0.86[EUR][1000 genomes]
rs1833069	0.89[EUR][1000 genomes]
rs2067052	0.87[EUR][1000 genomes]
rs2072416	0.87[EUR][1000 genomes]
rs2215565	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237774	0.93[EUR][1000 genomes]
rs2262068	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2518949	0.90[EUR][1000 genomes]
rs2518954	0.87[EUR][1000 genomes]
rs2535932	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2535933	0.83[ASN][1000 genomes]
rs2535934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2535938	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2535943	0.87[EUR][1000 genomes]
rs2535944	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv608376	chr7:126457779-126571077	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1849599	chr7:126507755-126557892	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv8211	chr7:126513183-126533173	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1849801	chr7:126513882-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv10276	chr7:126514673-126533162	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv1846203	chr7:126514725-126531028	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv1832206	chr7:126514725-126533360	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv1812850	chr7:126514725-126536800	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv1800137	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv1815126	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1826739	chr7:126514925-126530828	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1794204	chr7:126519897-126530828	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1812181	chr7:126519897-126530828	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv981575	chr7:126520557-126563439	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126523000-126524000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:126523200-126524000	Enhancers	Hela-S3	cervix
3	chr7:126523200-126527600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:126523400-126524400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links