Variant report

Variant	rs2538972
Chromosome Location	chr7:147594618-147594619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10233374	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs10238572	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10246256	0.89[JPT][hapmap]
rs1177007	0.94[JPT][hapmap]
rs1186173	0.88[JPT][hapmap]
rs1861010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1922892	0.94[ASN][1000 genomes]
rs2247042	0.93[ASN][1000 genomes]
rs2247043	0.94[ASN][1000 genomes]
rs2247137	0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2247143	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2247149	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2373269	0.87[YRI][hapmap]
rs2373270	0.87[YRI][hapmap]
rs2373273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2538974	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2538977	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538979	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538983	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538984	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538985	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538986	0.94[ASN][1000 genomes]
rs2538987	0.94[ASN][1000 genomes]
rs2538988	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs2538989	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538990	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2538991	0.94[ASN][1000 genomes]
rs2538992	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2538994	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs2708238	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2708239	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2708240	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2708241	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2708243	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2708255	0.89[ASN][1000 genomes]
rs2708257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708258	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708269	0.96[CEU][hapmap]
rs2708270	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710096	0.94[ASN][1000 genomes]
rs2710102	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710105	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710107	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710108	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710118	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710121	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs2710139	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2710140	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2888536	0.87[YRI][hapmap]
rs4140925	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs759177	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs759178	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7794345	1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[ASN][1000 genomes]
rs851715	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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