Variant report

Variant	rs2538973
Chromosome Location	chr7:147591839-147591840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11561915	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs11561916	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap]
rs11761543	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11771110	0.93[JPT][hapmap]
rs11980029	1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12533758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13223313	0.85[JPT][hapmap]
rs13225365	0.85[JPT][hapmap]
rs13233606	0.84[JPT][hapmap]
rs13234998	0.93[JPT][hapmap]
rs13235220	0.93[JPT][hapmap]
rs17237331	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs1861009	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2215798	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2538964	0.90[CEU][hapmap];0.82[YRI][hapmap]
rs2538975	0.81[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2708242	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2708244	0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2708259	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2710101	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2710103	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2710106	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2710109	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs34126004	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34902210	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35814206	0.88[ASN][1000 genomes]
rs57708946	0.81[EUR][1000 genomes]
rs57921419	0.88[ASN][1000 genomes]
rs58175733	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60467763	0.88[ASN][1000 genomes]
rs60967951	0.88[ASN][1000 genomes]
rs62474778	0.84[ASN][1000 genomes]
rs6946545	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3441359	chr7:147585772-147592059	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147589400-147592000	Enhancers	Brain Substantia Nigra	brain
2	chr7:147590600-147592000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:147591000-147592000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:147591600-147593400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:147591800-147593600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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