Variant report

Variant	rs2547957
Chromosome Location	chr5:98052368-98052369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs149247	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs150822	0.90[EUR][1000 genomes]
rs159162	0.86[EUR][1000 genomes]
rs1592853	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160710	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160711	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs160713	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs160714	0.94[EUR][1000 genomes]
rs160716	0.91[EUR][1000 genomes]
rs160720	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs162675	0.89[EUR][1000 genomes]
rs176892	0.94[EUR][1000 genomes]
rs184143	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2112421	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2545670	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2545692	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662244	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs294030	0.94[EUR][1000 genomes]
rs29770	0.86[CEU][hapmap]
rs29772	0.86[CEU][hapmap]
rs316506	0.93[EUR][1000 genomes]
rs316508	0.93[CEU][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs316510	0.94[EUR][1000 genomes]
rs373070	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs384863	0.93[EUR][1000 genomes]
rs392132	0.95[EUR][1000 genomes]
rs403888	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs408005	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs408400	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs426515	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs439509	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs442074	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs455749	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs455800	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs456244	0.90[EUR][1000 genomes]
rs456367	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs457215	0.90[EUR][1000 genomes]
rs458154	0.91[EUR][1000 genomes]
rs459865	0.91[EUR][1000 genomes]
rs460295	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs461258	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs461548	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs462719	0.81[EUR][1000 genomes]
rs463309	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs463872	0.94[EUR][1000 genomes]
rs464246	0.94[EUR][1000 genomes]
rs465003	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs465427	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67595117	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs981566	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs981567	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3416887	chr5:98052156-98052420	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98050800-98053400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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