Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1508791	0.88[EUR][1000 genomes]
rs162676	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1818348	0.81[AFR][1000 genomes]
rs183628	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs1967318	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2545678	0.89[EUR][1000 genomes]
rs2545682	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2545683	0.92[EUR][1000 genomes]
rs2545684	0.92[EUR][1000 genomes]
rs2545685	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2547958	0.88[EUR][1000 genomes]
rs2547962	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2547974	0.93[EUR][1000 genomes]
rs2547975	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2547976	0.90[EUR][1000 genomes]
rs2547978	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2547979	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2549200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2591443	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2591445	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2591446	0.90[EUR][1000 genomes]
rs2591447	0.96[CEU][hapmap];0.88[CHB][hapmap];0.90[EUR][1000 genomes]
rs2591449	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2591450	0.93[EUR][1000 genomes]
rs2662247	0.93[EUR][1000 genomes]
rs2662248	0.92[EUR][1000 genomes]
rs2662250	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs29771	0.84[CEU][hapmap]
rs720859	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2547961	RGMB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98056400-98059400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:98056400-98059400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:98056600-98059200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:98056600-98059400	Enhancers	HSMMtube	muscle
5	chr5:98056800-98059000	Enhancers	Osteobl	bone
6	chr5:98057000-98059000	Enhancers	Muscle Satellite Cultured Cells	--

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