Variant report

Variant	rs2549893
Chromosome Location	chr16:81082380-81082381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:81079864..81081981-chr16:81082304..81084589,2	MCF-7	breast:
2	chr16:81082137..81086308-chr16:81108446..81111994,4	K562	blood:
3	chr16:81078691..81081572-chr16:81082090..81085180,4	K562	blood:
4	chr16:81080745..81083107-chr16:81231797..81233650,2	MCF-7	breast:
5	chr16:81073681..81077156-chr16:81081079..81084155,3	MCF-7	breast:
6	chr16:81039673..81042304-chr16:81079605..81082488,2	MCF-7	breast:
7	chr16:81081030..81085437-chr16:81085906..81090062,5	MCF-7	breast:
8	chr16:81081881..81083637-chr16:81109528..81112357,2	K562	blood:
9	chr16:81082050..81083642-chr16:81085268..81087006,2	K562	blood:
10	chr16:81068994..81072999-chr16:81079171..81083841,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166451	Chromatin interaction
ENSG00000261141	Chromatin interaction
ENSG00000103121	Chromatin interaction
ENSG00000166455	Chromatin interaction
ENSG00000166454	Chromatin interaction
ENSG00000245059	Chromatin interaction
ENSG00000166473	Chromatin interaction
ENSG00000260213	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11866124	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12444974	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12918103	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12919463	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12919980	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12920066	1.00[EUR][1000 genomes]
rs12921900	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12921990	1.00[EUR][1000 genomes]
rs12922449	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12924715	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12924719	1.00[EUR][1000 genomes]
rs12928381	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12928648	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928790	1.00[EUR][1000 genomes]
rs12929250	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12930046	1.00[EUR][1000 genomes]
rs12930202	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs12931555	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12931678	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12931766	1.00[EUR][1000 genomes]
rs12931852	1.00[EUR][1000 genomes]
rs12932119	1.00[EUR][1000 genomes]
rs12932272	1.00[EUR][1000 genomes]
rs12932466	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12933920	1.00[EUR][1000 genomes]
rs13329702	1.00[EUR][1000 genomes]
rs13333603	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13336113	1.00[EUR][1000 genomes]
rs16954505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2241408	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278023	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2303214	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs34075739	1.00[EUR][1000 genomes]
rs34082687	1.00[EUR][1000 genomes]
rs34105513	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34262209	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34270219	1.00[EUR][1000 genomes]
rs34277507	1.00[EUR][1000 genomes]
rs34529307	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34545373	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34586837	1.00[EUR][1000 genomes]
rs34638844	1.00[EUR][1000 genomes]
rs34699659	1.00[EUR][1000 genomes]
rs34966856	1.00[EUR][1000 genomes]
rs34992819	1.00[EUR][1000 genomes]
rs35011155	1.00[EUR][1000 genomes]
rs35035454	0.87[EUR][1000 genomes]
rs35110550	1.00[EUR][1000 genomes]
rs35117857	1.00[EUR][1000 genomes]
rs35161190	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35282277	1.00[EUR][1000 genomes]
rs35292442	1.00[EUR][1000 genomes]
rs35552248	1.00[EUR][1000 genomes]
rs35674322	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35887664	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35890164	1.00[EUR][1000 genomes]
rs35899445	1.00[EUR][1000 genomes]
rs36040615	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36052656	1.00[EUR][1000 genomes]
rs36056886	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36099793	1.00[EUR][1000 genomes]
rs3759931	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4889233	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs5023849	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs57203494	1.00[EUR][1000 genomes]
rs6420421	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs71400131	1.00[EUR][1000 genomes]
rs71400134	1.00[EUR][1000 genomes]
rs71400135	1.00[EUR][1000 genomes]
rs71400136	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71400137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71400138	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71400140	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71400141	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71400142	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7200400	0.89[EUR][1000 genomes]
rs7202356	1.00[EUR][1000 genomes]
rs73582605	0.87[EUR][1000 genomes]
rs754428	0.89[EUR][1000 genomes]
rs804893	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8049650	0.87[EUR][1000 genomes]
rs8062810	1.00[EUR][1000 genomes]
rs8177862	1.00[EUR][1000 genomes]
rs8177863	1.00[EUR][1000 genomes]
rs8177878	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs8177891	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes]
rs8177919	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8177938	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9922227	1.00[EUR][1000 genomes]
rs9930427	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv573338	chr16:81020393-81106944	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv1897	chr16:81060566-81105260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv457564	chr16:81080366-81095091	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv457565	chr16:81080366-81095091	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
13	nsv457566	chr16:81080366-81095091	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
14	nsv457567	chr16:81080366-81095091	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
15	nsv457568	chr16:81080366-81095091	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv457569	chr16:81080366-81095091	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
17	nsv573346	chr16:81080366-81095091	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81071200-81082400	Weak transcription	Stomach Mucosa	stomach
2	chr16:81074000-81082400	Weak transcription	Fetal Heart	heart
3	chr16:81077000-81094600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:81078000-81083600	Weak transcription	Brain Angular Gyrus	brain
5	chr16:81078800-81083800	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:81079200-81082600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr16:81079400-81083600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:81079400-81083800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr16:81079400-81094400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr16:81079400-81109800	Weak transcription	Brain Hippocampus Middle	brain
11	chr16:81079800-81083800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:81079800-81094200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:81079800-81094200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:81080200-81082400	Weak transcription	Primary T cells from cord blood	blood
15	chr16:81080400-81110200	Weak transcription	Ovary	ovary
16	chr16:81080800-81083000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr16:81081400-81082400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:81081400-81082400	ZNF genes & repeats	Fetal Intestine Small	intestine
19	chr16:81081600-81082400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr16:81081600-81082400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr16:81081600-81082800	ZNF genes & repeats	Fetal Brain Female	brain
22	chr16:81081600-81083800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr16:81081800-81082400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:81081800-81082400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr16:81081800-81082400	ZNF genes & repeats	Pancreas	Pancrea
26	chr16:81081800-81082400	ZNF genes & repeats	Spleen	Spleen
27	chr16:81081800-81082600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:81082000-81082400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr16:81082000-81083000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr16:81082200-81082400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr16:81082200-81082400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr16:81082200-81082400	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr16:81082200-81082400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr16:81082200-81082400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links