Variant report

Variant	rs25531
Chromosome Location	chr17:28564346-28564347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr17:28563388-28564357	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:28430998..28431890-chr17:28563950..28564679,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266120	TF binding region
SLC6A4	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3338563	chr17:28563051-28565599	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3367727	chr17:28563426-28565524	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3371267	chr17:28563926-28564924	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv112334	chr17:28564317-28564359	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:28561800-28564600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr17:28562000-28565800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
3	chr17:28562000-28565800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:28562000-28565800	Enhancers	Fetal Heart	heart
5	chr17:28562200-28565400	Bivalent Enhancer	Spleen	Spleen
6	chr17:28562200-28565800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
7	chr17:28562200-28566200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr17:28562400-28564600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr17:28562400-28564800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr17:28563200-28564800	Enhancers	Pancreas	Pancrea
11	chr17:28563200-28565000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:28563200-28565000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr17:28563200-28565800	Bivalent Enhancer	Fetal Stomach	stomach
14	chr17:28563200-28566200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr17:28563200-28575000	Weak transcription	Aorta	Aorta
16	chr17:28563400-28564400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr17:28563400-28564400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:28563400-28564600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:28563400-28564600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr17:28563400-28564600	Bivalent Enhancer	A549	lung
21	chr17:28563400-28564800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr17:28563400-28564800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr17:28563400-28564800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr17:28563400-28565000	Enhancers	Right Ventricle	heart
25	chr17:28563400-28565200	Bivalent Enhancer	Stomach Mucosa	stomach
26	chr17:28563400-28565600	Bivalent Enhancer	Brain Hippocampus Middle	brain
27	chr17:28563400-28566000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr17:28563400-28566200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr17:28563400-28566200	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr17:28563400-28566400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
31	chr17:28563400-28567000	Enhancers	Lung	lung
32	chr17:28563600-28565200	Bivalent Enhancer	Placenta	Placenta
33	chr17:28563800-28564600	Active TSS	HepG2	liver
34	chr17:28563800-28565600	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:28563800-28566000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr17:28564000-28564400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr17:28564000-28564400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
38	chr17:28564000-28564400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:28564000-28564400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr17:28564000-28564400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr17:28564000-28564400	Bivalent Enhancer	Adipose Nuclei	Adipose
42	chr17:28564000-28564400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
43	chr17:28564000-28564400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
44	chr17:28564000-28564600	Enhancers	Liver	Liver
45	chr17:28564000-28564800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr17:28564000-28564800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:28564000-28564800	Weak transcription	Gastric	stomach
48	chr17:28564000-28564800	Bivalent Enhancer	GM12878-XiMat	blood
49	chr17:28564000-28564800	Bivalent Enhancer	Osteobl	bone
50	chr17:28564000-28565000	Enhancers	Right Atrium	heart

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