Variant report

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000806	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10009146	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs10011444	0.94[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs17362255	0.81[EUR][1000 genomes]
rs2253349	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2253360	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2253442	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2262515	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2555639	0.95[JPT][hapmap]
rs2555643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2555672	0.95[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2555673	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2555674	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56277334	0.99[ASN][1000 genomes]
rs62332188	0.90[ASN][1000 genomes]
rs6811079	0.91[ASN][1000 genomes]
rs6817069	0.93[ASN][1000 genomes]
rs6844275	0.91[ASN][1000 genomes]
rs9990951	0.86[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175449800-175460000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:175458800-175461200	Enhancers	HepG2	liver
3	chr4:175458800-175461400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:175459000-175459800	Enhancers	Pancreas	Pancrea
5	chr4:175459000-175460000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr4:175459000-175460000	Enhancers	A549	lung
7	chr4:175459000-175461200	Enhancers	HMEC	breast
8	chr4:175459000-175461400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:175459000-175461600	Enhancers	Placenta	Placenta
10	chr4:175459200-175459800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:175459200-175459800	Enhancers	Stomach Mucosa	stomach
12	chr4:175459200-175460000	Flanking Active TSS	GM12878-XiMat	blood
13	chr4:175459200-175460200	Enhancers	K562	blood
14	chr4:175459200-175461600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:175459400-175459800	Enhancers	Gastric	stomach
16	chr4:175459400-175460000	Enhancers	Hela-S3	cervix
17	chr4:175459600-175460000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:175459600-175460000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr4:175459600-175460200	Flanking Active TSS	NHEK	skin
20	chr4:175459600-175460400	Enhancers	Liver	Liver

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