Variant report

Variant	rs2555660
Chromosome Location	chr4:175411382-175411383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175410591..175412440-chr4:175417791..175419375,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11133042	0.86[EUR][1000 genomes]
rs1816204	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2612656	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2612694	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3846298	0.80[ASN][1000 genomes]
rs3857075	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6419992	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7685956	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7691986	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7691993	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881299	chr4:175403673-175415442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175406800-175412800	Weak transcription	Liver	Liver
3	chr4:175406800-175412800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:175406800-175415200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:175406800-175415800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175407000-175415000	Weak transcription	Primary T cells from cord blood	blood
7	chr4:175408200-175411600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:175409200-175415000	Weak transcription	Fetal Thymus	thymus
9	chr4:175409400-175424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:175410000-175424600	Weak transcription	Fetal Stomach	stomach
11	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:175410400-175412600	Enhancers	Hela-S3	cervix
13	chr4:175410400-175418000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:175410800-175412600	Weak transcription	Placenta	Placenta
15	chr4:175410800-175417400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:175410800-175420800	Weak transcription	Lung	lung
17	chr4:175410800-175425400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:175410800-175430800	Weak transcription	Gastric	stomach
19	chr4:175410800-175440000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:175411000-175418200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:175411200-175411400	Flanking Active TSS	A549	lung
22	chr4:175411200-175412400	Enhancers	Muscle Satellite Cultured Cells	--

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