Variant report

Variant	rs2555667
Chromosome Location	chr4:175400460-175400461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11133038	0.92[ASN][1000 genomes]
rs11133040	0.93[ASN][1000 genomes]
rs17052166	0.92[ASN][1000 genomes]
rs1816204	0.81[AMR][1000 genomes]
rs2098948	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2612656	0.81[AMR][1000 genomes]
rs2612665	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2612694	0.81[AMR][1000 genomes]
rs34991202	0.90[ASN][1000 genomes]
rs35866534	0.87[ASN][1000 genomes]
rs3857074	0.86[AMR][1000 genomes]
rs3909712	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6813462	0.87[ASN][1000 genomes]
rs6838650	0.93[ASN][1000 genomes]
rs6857399	0.90[ASN][1000 genomes]
rs7670400	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7691993	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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