Variant report

Variant	rs255703
Chromosome Location	chr5:111839752-111839753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs163449	0.83[EUR][1000 genomes]
rs163451	0.81[EUR][1000 genomes]
rs163452	0.81[EUR][1000 genomes]
rs189296	0.81[EUR][1000 genomes]
rs255706	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs338845	0.91[ASN][1000 genomes]
rs338847	0.91[ASN][1000 genomes]
rs338855	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs338857	0.81[EUR][1000 genomes]
rs341315	0.86[AFR][1000 genomes]
rs424258	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv882715	chr5:111836278-111894491	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111838200-111840000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr5:111839200-111840000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:111839200-111840000	Enhancers	Esophagus	oesophagus
4	chr5:111839200-111840000	Enhancers	Placenta	Placenta
5	chr5:111839200-111840000	Enhancers	Lung	lung
6	chr5:111839200-111840200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:111839400-111839800	Active TSS	K562	blood
8	chr5:111839400-111840000	Enhancers	Gastric	stomach
9	chr5:111839400-111840200	Enhancers	Primary B cells from peripheral blood	blood
10	chr5:111839400-111840200	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links