Variant report

Variant	rs2560505
Chromosome Location	chr5:116807207-116807208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10043080	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs10071503	0.84[EUR][1000 genomes]
rs12109171	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs13359727	0.81[EUR][1000 genomes]
rs2560506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2560510	0.82[ASN][1000 genomes]
rs28662851	0.80[EUR][1000 genomes]
rs61002039	0.86[EUR][1000 genomes]
rs73785761	0.80[EUR][1000 genomes]
rs73785769	0.86[EUR][1000 genomes]
rs73785771	0.86[EUR][1000 genomes]
rs73785772	0.86[EUR][1000 genomes]
rs73785773	0.86[EUR][1000 genomes]
rs750601	0.82[ASN][1000 genomes]
rs9327042	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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