Variant report
| Variant | rs2560507 |
|---|---|
| Chromosome Location | chr5:116806420-116806421 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:116790570..116793760-chr5:116804733..116807566,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248663 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1428046 | 0.90[ASN][1000 genomes] |
| rs17164457 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2081859 | 0.99[ASN][1000 genomes] |
| rs2099039 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2560503 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2560513 | 0.92[ASN][1000 genomes] |
| rs2560514 | 0.92[ASN][1000 genomes] |
| rs2560518 | 0.81[ASN][1000 genomes] |
| rs2560634 | 0.99[ASN][1000 genomes] |
| rs2560636 | 0.97[ASN][1000 genomes] |
| rs2560637 | 0.97[ASN][1000 genomes] |
| rs2624506 | 0.92[ASN][1000 genomes] |
| rs2624514 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2624569 | 0.83[ASN][1000 genomes] |
| rs2624570 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830457 | chr5:116724777-116875060 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv882756 | chr5:116783660-116905052 | Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
