Variant report

Variant	rs2560512
Chromosome Location	chr5:116798241-116798242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12173141	1.00[CHB][hapmap]
rs1540407	1.00[CEU][hapmap]
rs2195292	1.00[CEU][hapmap]
rs2560504	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2560511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560517	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560519	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2560522	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560561	1.00[CEU][hapmap]
rs2560562	1.00[CEU][hapmap]
rs2560564	1.00[CEU][hapmap]
rs2560565	1.00[CEU][hapmap]
rs2560569	1.00[CEU][hapmap]
rs2560570	1.00[CEU][hapmap]
rs2560571	1.00[CEU][hapmap]
rs2560575	1.00[CEU][hapmap]
rs2560577	1.00[CEU][hapmap]
rs2560578	1.00[CEU][hapmap]
rs2560579	1.00[CEU][hapmap]
rs2560580	1.00[CEU][hapmap]
rs2560581	1.00[CEU][hapmap]
rs2560582	1.00[CEU][hapmap]
rs2624445	1.00[CEU][hapmap]
rs2624446	1.00[CEU][hapmap]
rs2624448	1.00[CEU][hapmap]
rs2624449	1.00[CEU][hapmap]
rs2624450	1.00[CEU][hapmap]
rs2624451	1.00[CEU][hapmap]
rs2624505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2624507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624508	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624520	1.00[ASN][1000 genomes]
rs2624521	1.00[ASN][1000 genomes]
rs2624549	1.00[CEU][hapmap]
rs2624552	1.00[CEU][hapmap]
rs2624555	1.00[CEU][hapmap]
rs2624568	0.83[ASN][1000 genomes]
rs2624571	1.00[CEU][hapmap]
rs2624574	1.00[CEU][hapmap]
rs34430596	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv969245	chr5:116796952-116800030	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116791800-116799400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:116797200-116798400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr5:116797200-116798800	Weak transcription	HSMM	muscle
4	chr5:116798000-116799000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:116798000-116799600	Weak transcription	Brain Anterior Caudate	brain

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