Variant report
Variant | rs2560586 |
---|---|
Chromosome Location | chr5:116744753-116744754 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:116744135..116746719-chr5:116750453..116752242,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000248663 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10065401 | 0.82[CHB][hapmap];0.81[ASN][1000 genomes] |
rs1030461 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs1366185 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1366187 | 0.86[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs2016802 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2245249 | 0.96[CEU][hapmap];1.00[JPT][hapmap] |
rs2263587 | 0.87[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2560583 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2560600 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2560608 | 0.85[ASN][1000 genomes] |
rs2624463 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2624465 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2624558 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882755 | chr5:116647725-116748877 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv830457 | chr5:116724777-116875060 | Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv599487 | chr5:116732456-116772093 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
No data |