Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1540407	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2195292	1.00[CEU][hapmap]
rs2560522	1.00[CEU][hapmap]
rs2560561	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560562	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560564	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560565	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560569	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560570	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560571	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560575	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs2560577	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560578	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560579	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560580	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560581	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2560582	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624445	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624446	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624448	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624449	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs2624450	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624451	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624505	1.00[CEU][hapmap]
rs2624549	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624550	0.84[AFR][1000 genomes]
rs2624552	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624555	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624571	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2624574	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882755	chr5:116647725-116748877	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116729800-116730600	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr5:116730000-116730600	Enhancers	Colon Smooth Muscle	Colon
3	chr5:116730000-116731200	Enhancers	Rectal Mucosa Donor 31	rectum

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