Variant report

Variant	rs2560829
Chromosome Location	chr5:16558145-16558146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1991468	0.82[ASN][1000 genomes]
rs1991469	0.82[ASN][1000 genomes]
rs1991470	0.83[ASN][1000 genomes]
rs1991471	0.83[ASN][1000 genomes]
rs1991472	0.83[ASN][1000 genomes]
rs2019248	0.82[ASN][1000 genomes]
rs2019260	0.82[ASN][1000 genomes]
rs2560830	0.82[ASN][1000 genomes]
rs2560831	0.84[ASN][1000 genomes]
rs2560832	0.80[ASN][1000 genomes]
rs2617422	0.82[ASN][1000 genomes]
rs2617423	0.82[ASN][1000 genomes]
rs2617424	0.82[ASN][1000 genomes]
rs2617425	0.82[ASN][1000 genomes]
rs31288	0.81[ASN][1000 genomes]
rs899186	0.82[ASN][1000 genomes]
rs991891	0.82[ASN][1000 genomes]
rs994099	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:16542600-16567200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr5:16543200-16591600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:16543600-16589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:16544000-16562400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:16544200-16565200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:16545000-16574600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:16546200-16559400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:16549200-16569000	Weak transcription	Left Ventricle	heart
10	chr5:16549200-16580200	Weak transcription	Gastric	stomach
11	chr5:16552400-16559200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:16553000-16568600	Weak transcription	NHDF-Ad	bronchial
13	chr5:16553000-16573400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:16553200-16562000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:16553200-16564600	Weak transcription	Psoas Muscle	Psoas
16	chr5:16553200-16564600	Weak transcription	Thymus	Thymus
17	chr5:16553400-16558200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:16553400-16559200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:16553400-16559600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:16553400-16564200	Weak transcription	Fetal Heart	heart
21	chr5:16553400-16569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr5:16553400-16572800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr5:16553600-16559200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:16555200-16571400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:16555600-16558200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:16556400-16569600	Weak transcription	Primary B cells from cord blood	blood
27	chr5:16556600-16560800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr5:16556800-16558400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr5:16556800-16561200	Enhancers	Brain Cingulate Gyrus	brain
30	chr5:16556800-16567600	Weak transcription	Fetal Thymus	thymus
31	chr5:16557000-16559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr5:16557200-16558600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:16557400-16558200	Weak transcription	Brain Substantia Nigra	brain
34	chr5:16557400-16558400	Weak transcription	Brain Angular Gyrus	brain
35	chr5:16557600-16558400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr5:16557600-16561400	Enhancers	Brain Hippocampus Middle	brain
37	chr5:16558000-16559600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr5:16558000-16569000	Weak transcription	Brain Germinal Matrix	brain

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