Variant report

Variant	rs2562864
Chromosome Location	chr4:148228815-148228816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11944452	0.88[AFR][1000 genomes]
rs17474227	0.86[ASN][1000 genomes]
rs1816279	0.86[ASN][1000 genomes]
rs2562885	0.91[EUR][1000 genomes]
rs2714885	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2714893	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2714896	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4333163	0.91[EUR][1000 genomes]
rs62342993	0.83[EUR][1000 genomes]
rs62343017	0.91[EUR][1000 genomes]
rs62343027	0.86[ASN][1000 genomes]
rs73856025	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148225400-148229400	Weak transcription	Fetal Kidney	kidney
2	chr4:148227800-148230400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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