Variant report

Variant	rs2570241
Chromosome Location	chr15:52134455-52134456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52120473..52124016-chr15:52133834..52139102,7	K562	blood:
2	chr15:52132428..52137559-chr15:52138263..52141048,4	MCF-7	breast:
3	chr15:52132092..52134106-chr15:52134200..52135846,2	MCF-7	breast:
4	chr15:52129040..52133421-chr15:52134334..52139621,6	K562	blood:
5	chr15:52121368..52123870-chr15:52134346..52137266,2	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 291 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:289)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap]
rs1025184	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs1035739	0.84[EUR][1000 genomes]
rs10444824	0.87[EUR][1000 genomes]
rs10444825	0.86[EUR][1000 genomes]
rs10775145	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs10851503	0.96[EUR][1000 genomes]
rs10851504	0.99[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs11070867	0.80[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs11070869	0.86[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs1135871	0.84[ASN][1000 genomes]
rs11630253	0.89[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs11631858	0.87[EUR][1000 genomes]
rs11636345	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs11636869	0.91[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs11638677	0.88[EUR][1000 genomes]
rs11638820	0.93[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs12050524	0.87[EUR][1000 genomes]
rs12591672	0.93[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12901638	0.93[EUR][1000 genomes]
rs12902346	0.80[EUR][1000 genomes]
rs12903707	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs12904413	0.86[EUR][1000 genomes]
rs12904900	0.85[EUR][1000 genomes]
rs12905283	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs12912928	0.91[EUR][1000 genomes]
rs12913583	0.90[EUR][1000 genomes]
rs12913850	0.96[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12917133	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs1350174	0.84[GIH][hapmap];0.83[TSI][hapmap]
rs17526463	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs17539905	0.89[EUR][1000 genomes]
rs17610862	0.86[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs17612102	0.84[EUR][1000 genomes]
rs17612123	0.87[EUR][1000 genomes]
rs1811326	0.88[ASW][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes]
rs1840708	1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1867984	0.93[AMR][1000 genomes]
rs1902430	0.84[GIH][hapmap];0.83[TSI][hapmap]
rs1972689	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes]
rs1991267	0.85[CEU][hapmap]
rs2006772	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2006773	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs2010026	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2014638	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2034856	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs2034857	0.87[GIH][hapmap];0.87[TSI][hapmap]
rs2034858	0.93[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs2052705	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2077743	0.84[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs2114191	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2241503	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2251135	0.81[EUR][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2252831	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253116	0.94[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2264339	0.91[AMR][1000 genomes]
rs2303443	0.93[GIH][hapmap];0.86[TSI][hapmap]
rs2414116	0.82[GIH][hapmap]
rs2414119	0.80[AMR][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.90[GIH][hapmap];0.88[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2433222	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2436657	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2436658	0.90[EUR][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2436661	0.93[AMR][1000 genomes]
rs2436662	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441780	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs2448947	0.90[EUR][1000 genomes]
rs2448948	0.92[EUR][1000 genomes]
rs2448949	0.87[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2448951	0.92[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2470590	0.80[EUR][1000 genomes]
rs2470591	0.81[EUR][1000 genomes]
rs2470600	0.92[EUR][1000 genomes]
rs2470601	0.90[EUR][1000 genomes]
rs2470602	0.90[EUR][1000 genomes]
rs2470603	0.84[EUR][1000 genomes]
rs2470605	0.83[EUR][1000 genomes]
rs2470607	0.83[EUR][1000 genomes]
rs2470608	0.92[EUR][1000 genomes]
rs2470610	0.90[EUR][1000 genomes]
rs2470611	0.89[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs2470616	0.89[EUR][1000 genomes]
rs2470617	0.82[ASW][hapmap];0.96[CEU][hapmap];0.90[GIH][hapmap];0.86[TSI][hapmap]
rs2470618	0.91[EUR][1000 genomes]
rs2470619	0.90[AMR][1000 genomes]
rs2554305	0.80[YRI][hapmap];0.88[AMR][1000 genomes]
rs2554306	0.88[AMR][1000 genomes]
rs2554307	0.88[AMR][1000 genomes]
rs2554308	0.88[AMR][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2554322	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554328	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554332	0.95[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2554334	0.93[AMR][1000 genomes]
rs2554336	0.82[ASW][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes]
rs2554337	0.81[EUR][1000 genomes]
rs2554342	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2554345	0.93[AMR][1000 genomes]
rs2554348	0.92[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2554349	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2554350	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2554353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570224	0.88[ASW][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570228	0.93[GIH][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes]
rs2570231	0.86[AMR][1000 genomes]
rs2570233	0.92[YRI][hapmap];0.89[AMR][1000 genomes]
rs2570235	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2570236	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2570237	0.89[AMR][1000 genomes]
rs2570238	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2570239	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2570240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2570248	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2570251	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2570252	0.95[CHB][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570253	0.95[CHB][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2570258	0.93[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes]
rs2570260	0.91[AMR][1000 genomes]
rs2570263	0.91[EUR][1000 genomes]
rs2570268	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2570269	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2570271	0.90[EUR][1000 genomes]
rs2570275	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2593168	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593170	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2593173	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2593177	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593179	0.92[EUR][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2593183	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2593188	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2593191	0.93[AMR][1000 genomes]
rs2593194	0.81[EUR][1000 genomes]
rs2593198	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2593204	0.84[EUR][1000 genomes]
rs2623243	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2623244	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2623254	0.88[AMR][1000 genomes]
rs2623255	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2623259	0.95[CHB][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2623262	0.93[AMR][1000 genomes]
rs2623266	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2623279	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2623284	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2623285	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2623286	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2623288	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2623289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2912188	0.88[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2916170	0.90[EUR][1000 genomes]
rs2916171	0.90[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2916175	0.92[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2921951	0.90[EUR][1000 genomes]
rs2921953	0.90[EUR][1000 genomes]
rs2929422	0.88[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2929428	0.89[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2959289	0.86[EUR][1000 genomes]
rs2959291	0.88[EUR][1000 genomes]
rs2959292	0.88[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	1.00[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs2959300	0.90[EUR][1000 genomes]
rs2959302	0.89[EUR][1000 genomes]
rs2959304	0.87[EUR][1000 genomes]
rs2959305	0.92[EUR][1000 genomes]
rs2959306	0.92[EUR][1000 genomes]
rs2959307	0.91[EUR][1000 genomes]
rs3110551	0.81[EUR][1000 genomes]
rs3110553	0.80[EUR][1000 genomes]
rs34504520	0.87[EUR][1000 genomes]
rs34842090	0.81[EUR][1000 genomes]
rs35270232	0.90[EUR][1000 genomes]
rs35823585	0.88[EUR][1000 genomes]
rs36087956	0.90[EUR][1000 genomes]
rs3751596	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes]
rs3794532	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3794535	0.93[GIH][hapmap];0.89[TSI][hapmap]
rs4238383	0.93[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs4365237	0.82[EUR][1000 genomes]
rs4774602	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs4775983	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes]
rs56148956	0.87[EUR][1000 genomes]
rs56185947	0.87[EUR][1000 genomes]
rs62015190	0.85[EUR][1000 genomes]
rs62016192	0.93[EUR][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6493523	0.93[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes]
rs6493525	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs689884	0.89[GIH][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7162176	0.80[EUR][1000 genomes]
rs7162554	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7164961	0.87[EUR][1000 genomes]
rs7165585	0.83[TSI][hapmap]
rs7168659	1.00[CEU][hapmap]
rs7170091	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7170910	0.93[EUR][1000 genomes]
rs7171516	0.88[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs7175017	0.81[EUR][1000 genomes]
rs7178166	0.82[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7178940	0.88[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap]
rs7181553	0.89[GIH][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap]
rs726158	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs72732914	0.92[EUR][1000 genomes]
rs8024585	0.91[EUR][1000 genomes]
rs8025069	0.82[EUR][1000 genomes]
rs8026521	0.90[EUR][1000 genomes]
rs8027721	0.81[EUR][1000 genomes]
rs8028258	0.86[GIH][hapmap];0.83[TSI][hapmap]
rs8028486	0.90[EUR][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs8029036	0.87[EUR][1000 genomes]
rs8031045	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8033433	0.92[EUR][1000 genomes]
rs8035126	0.93[EUR][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap]
rs8038344	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8040975	0.82[EUR][1000 genomes]
rs8040991	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs919059	0.93[AMR][1000 genomes]
rs990665	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2830255	chr15:52133914-52274863	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2570241	TMOD2	cis	cerebellum	SCAN
rs2570241	SCG3	cis	Cerebellum	GTEx
rs2570241	SCG3	cis	Frontal Cortex	GTEx

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52123600-52140000	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:52124200-52134600	Weak transcription	HSMM	muscle
3	chr15:52124200-52134800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:52124200-52135000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:52124200-52135000	Weak transcription	Aorta	Aorta
6	chr15:52124200-52135400	Weak transcription	Thymus	Thymus
7	chr15:52125000-52137600	Weak transcription	Lung	lung
8	chr15:52129000-52136000	Enhancers	Fetal Lung	lung
9	chr15:52129000-52136600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr15:52129000-52140200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:52129200-52139800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:52129400-52140000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:52130000-52155000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:52130200-52134600	Weak transcription	Psoas Muscle	Psoas
15	chr15:52130200-52135000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:52130400-52134600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:52130400-52134600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:52130400-52134600	Weak transcription	HSMMtube	muscle
19	chr15:52130400-52134800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:52130400-52134800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:52130400-52134800	Weak transcription	Osteobl	bone
22	chr15:52130400-52135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:52130400-52135000	Weak transcription	Brain Substantia Nigra	brain
24	chr15:52130400-52135200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:52130400-52137000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:52130400-52137600	Weak transcription	Placenta	Placenta
27	chr15:52130600-52134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr15:52130600-52134800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:52130600-52134800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:52130600-52135000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:52130600-52135600	Weak transcription	Brain Anterior Caudate	brain
32	chr15:52130600-52136200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr15:52130800-52134600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:52130800-52134600	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:52130800-52134600	Weak transcription	NHLF	lung
36	chr15:52130800-52135000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr15:52130800-52135200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:52130800-52136400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:52130800-52137400	Weak transcription	Esophagus	oesophagus
40	chr15:52130800-52137600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:52130800-52155200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:52131000-52134600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:52131000-52134600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:52131000-52135000	Weak transcription	Fetal Stomach	stomach
45	chr15:52131000-52137800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:52131200-52134600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:52131200-52134600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr15:52131200-52135000	Weak transcription	Brain Angular Gyrus	brain
49	chr15:52131600-52134600	Weak transcription	Spleen	Spleen
50	chr15:52131600-52135200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links