Variant report
Variant | rs2572116 |
---|---|
Chromosome Location | chr6:99482764-99482765 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12173555 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1884185 | 0.81[ASN][1000 genomes] |
rs2180048 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2300063 | 0.91[CEU][hapmap] |
rs2572095 | 0.91[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[JPT][hapmap];0.90[TSI][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2572099 | 0.83[ASN][1000 genomes] |
rs2572109 | 0.83[ASN][1000 genomes] |
rs2747731 | 0.83[ASN][1000 genomes] |
rs2747733 | 0.83[ASN][1000 genomes] |
rs2747736 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2747738 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs28488166 | 0.82[ASN][1000 genomes] |
rs55923681 | 0.82[ASN][1000 genomes] |
rs73505759 | 0.81[ASN][1000 genomes] |
rs7742800 | 0.90[CEU][hapmap] |
rs9372982 | 0.91[CEU][hapmap];0.95[CHD][hapmap] |
rs9375721 | 0.91[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap] |
rs9375728 | 0.91[CEU][hapmap] |
rs9375729 | 0.91[CEU][hapmap] |
rs9375807 | 0.91[CEU][hapmap] |
rs9385544 | 0.91[CEU][hapmap] |
rs9388895 | 0.91[CEU][hapmap];0.82[JPT][hapmap] |
rs9388899 | 0.82[ASN][1000 genomes] |
rs9388909 | 0.82[ASN][1000 genomes] |
rs9402350 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9402371 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv604253 | chr6:98857397-99630038 | Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:99480600-99484600 | Weak transcription | Psoas Muscle | Psoas |