Variant report

Variant	rs2574879
Chromosome Location	chr1:224960545-224960546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1436166	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1436176	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1898191	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2016652	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2574874	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2574877	0.83[ASN][1000 genomes]
rs2574878	0.83[AMR][1000 genomes]
rs2574881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2662907	0.83[ASN][1000 genomes]
rs2662917	0.89[JPT][hapmap]
rs2662922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2662923	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2662924	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2662925	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2662927	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2802552	0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2802556	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2802558	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2802559	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2802562	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs2802563	0.85[ASN][1000 genomes]
rs2802564	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2802730	0.81[AMR][1000 genomes]
rs2802740	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2802741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2802742	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2802747	0.83[AMR][1000 genomes]
rs3012182	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs3012183	0.87[AMR][1000 genomes]
rs3012184	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224953000-224960800	Weak transcription	Pancreas	Pancrea
2	chr1:224956000-224966400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:224958000-224972400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:224958800-224972000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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