Variant report

Variant	rs2576230
Chromosome Location	chr1:217129639-217129640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1030845	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1030853	0.83[AFR][1000 genomes]
rs1030854	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs1030855	0.93[EUR][1000 genomes]
rs10492959	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs10779288	0.82[JPT][hapmap]
rs10863284	0.93[CEU][hapmap]
rs10863285	0.82[JPT][hapmap]
rs11117734	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117736	0.93[EUR][1000 genomes]
rs11117739	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117745	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1339214	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs1436887	0.87[AFR][1000 genomes]
rs1561189	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1561190	0.86[AFR][1000 genomes]
rs1832523	0.83[CEU][hapmap]
rs1836964	0.86[AFR][1000 genomes]
rs1865920	0.93[AFR][1000 genomes]
rs1865921	0.93[AFR][1000 genomes]
rs1890551	0.83[CEU][hapmap]
rs1890552	0.83[CEU][hapmap]
rs1960901	0.94[CEU][hapmap]
rs2118149	0.83[AFR][1000 genomes]
rs2118150	0.84[YRI][hapmap];0.84[AFR][1000 genomes]
rs2164612	0.82[AFR][1000 genomes]
rs2377265	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2437880	0.93[AFR][1000 genomes]
rs2576196	0.83[CEU][hapmap]
rs2576197	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs2576199	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2576200	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs2576201	0.83[CEU][hapmap]
rs2576208	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs2576210	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs2576211	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs2576214	0.92[AFR][1000 genomes]
rs2576216	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2576217	0.92[AFR][1000 genomes]
rs2576218	0.87[AFR][1000 genomes]
rs2576219	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2576220	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2576221	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2576222	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2576223	0.83[AFR][1000 genomes]
rs2576224	0.88[AFR][1000 genomes]
rs2576225	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2576226	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs2576227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576271	0.89[CEU][hapmap]
rs2789554	0.86[AFR][1000 genomes]
rs2789557	0.83[CEU][hapmap]
rs2789558	0.83[CEU][hapmap]
rs2789560	0.83[CEU][hapmap]
rs2789561	0.82[YRI][hapmap];0.86[AFR][1000 genomes]
rs2789563	0.86[AFR][1000 genomes]
rs2789572	0.90[EUR][1000 genomes]
rs2818754	0.88[CEU][hapmap]
rs2818755	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2818757	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2818758	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs2818765	0.94[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2818768	0.83[CEU][hapmap]
rs2818769	0.83[CEU][hapmap]
rs2818776	0.86[AFR][1000 genomes]
rs2818778	0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs2818779	0.87[AFR][1000 genomes]
rs2818780	0.92[AFR][1000 genomes]
rs2818781	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2818782	0.92[AFR][1000 genomes]
rs2818783	0.92[AFR][1000 genomes]
rs2818784	0.92[AFR][1000 genomes]
rs2818785	0.93[AFR][1000 genomes]
rs2818786	0.93[AFR][1000 genomes]
rs2818788	0.89[AFR][1000 genomes]
rs2818789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818792	0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2818794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818797	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818798	0.90[EUR][1000 genomes]
rs2818799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818800	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818801	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs3000609	0.83[CEU][hapmap]
rs3098286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3122530	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs6657447	0.86[AFR][1000 genomes]
rs893127	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217122400-217146200	Weak transcription	Pancreas	Pancrea
2	chr1:217125200-217135400	Weak transcription	Fetal Heart	heart
3	chr1:217127000-217130200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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