Variant report
| Variant | rs2577081 |
|---|---|
| Chromosome Location | chr18:28706285-28706286 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12960042 | 0.81[ASN][1000 genomes] |
| rs1595358 | 0.92[ASN][1000 genomes] |
| rs1626413 | 1.00[ASN][1000 genomes] |
| rs1626700 | 0.92[ASN][1000 genomes] |
| rs1658108 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1658110 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1658111 | 0.99[ASN][1000 genomes] |
| rs1658112 | 1.00[ASN][1000 genomes] |
| rs1658130 | 0.89[ASN][1000 genomes] |
| rs1658135 | 1.00[ASN][1000 genomes] |
| rs17800159 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1789036 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1789043 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1789072 | 0.99[ASN][1000 genomes] |
| rs1790669 | 0.92[ASN][1000 genomes] |
| rs1790670 | 0.92[ASN][1000 genomes] |
| rs1790671 | 0.92[ASN][1000 genomes] |
| rs1790673 | 0.92[ASN][1000 genomes] |
| rs1790674 | 0.92[ASN][1000 genomes] |
| rs1790675 | 0.92[ASN][1000 genomes] |
| rs1790691 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1992143 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2243907 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2577079 | 0.99[ASN][1000 genomes] |
| rs4799563 | 1.00[ASN][1000 genomes] |
| rs4799564 | 0.99[ASN][1000 genomes] |
| rs4799565 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530788 | chr18:28596461-28751891 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3360998 | chr18:28693111-28881812 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28703200-28708200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
