Variant report

Variant	rs2583594
Chromosome Location	chr4:120668572-120668573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2583595	1.00[AFR][1000 genomes]
rs2583606	1.00[AFR][1000 genomes]
rs2583615	1.00[AFR][1000 genomes]
rs2714963	1.00[AFR][1000 genomes]
rs2714964	0.93[AFR][1000 genomes]
rs2714969	1.00[AFR][1000 genomes]
rs2714975	1.00[AFR][1000 genomes]
rs2714979	1.00[AFR][1000 genomes]
rs2714981	1.00[AFR][1000 genomes]
rs4834809	0.83[AFR][1000 genomes]
rs6816416	0.83[AFR][1000 genomes]
rs6844735	0.88[AFR][1000 genomes]
rs9884801	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1802546	chr4:120558608-120675026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1010638	chr4:120586178-120671835	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120658000-120670000	Weak transcription	Psoas Muscle	Psoas
2	chr4:120658000-120670200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:120661400-120669200	Weak transcription	Fetal Lung	lung
4	chr4:120661800-120669800	Weak transcription	Fetal Stomach	stomach
5	chr4:120666600-120670800	Enhancers	NHDF-Ad	bronchial
6	chr4:120667600-120668600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:120667600-120672800	Enhancers	Osteobl	bone
8	chr4:120668000-120668600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:120668000-120668600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:120668000-120668600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:120668000-120668600	Enhancers	NHLF	lung
12	chr4:120668000-120668800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:120668200-120668600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:120668400-120668800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:120668400-120671600	Weak transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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