Variant report

Variant	rs2588355
Chromosome Location	chr12:10837542-10837543
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1091308	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053946	0.91[EUR][1000 genomes]
rs11053947	0.91[EUR][1000 genomes]
rs11053962	1.00[CHB][hapmap]
rs11053963	0.91[EUR][1000 genomes]
rs11053965	0.91[EUR][1000 genomes]
rs11053966	0.91[EUR][1000 genomes]
rs11053974	0.91[EUR][1000 genomes]
rs11053975	0.91[EUR][1000 genomes]
rs12227186	0.91[EUR][1000 genomes]
rs12227197	1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12228438	0.91[EUR][1000 genomes]
rs12228453	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs12231169	0.91[EUR][1000 genomes]
rs12231171	0.91[EUR][1000 genomes]
rs33016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7139026	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1050613	chr12:10809805-10844399	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10834600-10853800	Weak transcription	Pancreas	Pancrea
2	chr12:10834800-10848600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:10836800-10851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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