Variant report

Variant	rs2589578
Chromosome Location	chr1:220751563-220751564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220742050..220744695-chr1:220750839..220754765,3	K562	blood:
2	chr1:220749189..220751737-chr1:220755091..220757350,2	K562	blood:
3	chr1:220749131..220751200-chr1:220751279..220752984,2	K562	blood:
4	chr1:220738520..220740404-chr1:220751038..220753296,2	MCF-7	breast:
5	chr1:220742182..220744105-chr1:220750839..220752590,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1073460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10779408	0.88[EUR][1000 genomes]
rs10779409	0.90[EUR][1000 genomes]
rs12048541	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12753927	0.86[EUR][1000 genomes]
rs12758833	0.90[EUR][1000 genomes]
rs17007855	0.86[EUR][1000 genomes]
rs17007885	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1933002	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933008	0.92[ASN][1000 genomes]
rs2253641	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2378401	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2589588	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786601	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2786604	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2786607	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786609	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786613	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2786619	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889928	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2993209	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2994527	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35327085	0.86[EUR][1000 genomes]
rs35553664	0.90[EUR][1000 genomes]
rs4011894	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6677302	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7532064	0.85[EUR][1000 genomes]
rs9431262	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748000-220755600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:220748000-220762200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:220748200-220752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:220748200-220762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:220748400-220762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:220749000-220752600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
14	chr1:220750000-220753000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:220750400-220752800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:220751000-220751800	Enhancers	HMEC	breast
19	chr1:220751000-220752000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:220751000-220758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:220751200-220755600	Weak transcription	Brain Germinal Matrix	brain
22	chr1:220751200-220763200	Weak transcription	Fetal Brain Female	brain
23	chr1:220751400-220752000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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