Variant report

Variant	rs2589581
Chromosome Location	chr1:220743041-220743042
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220742182..220744105-chr1:220750839..220752590,2	K562	blood:
2	chr1:220742050..220744695-chr1:220750839..220754765,3	K562	blood:
3	chr1:220741257..220743990-chr1:220745634..220747216,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10495149	0.85[ASN][1000 genomes]
rs10746403	0.83[ASN][1000 genomes]
rs10779412	0.83[ASN][1000 genomes]
rs10779413	0.83[ASN][1000 genomes]
rs10779414	0.83[ASN][1000 genomes]
rs10863557	0.81[EUR][1000 genomes]
rs11118564	0.80[EUR][1000 genomes]
rs11118565	0.82[EUR][1000 genomes]
rs11118566	0.82[EUR][1000 genomes]
rs11118567	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11118570	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118573	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11118576	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118579	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118584	0.85[ASN][1000 genomes]
rs11588721	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1193032	0.83[ASN][1000 genomes]
rs12044432	0.84[ASN][1000 genomes]
rs12047297	0.82[EUR][1000 genomes]
rs12126252	0.82[ASN][1000 genomes]
rs12408540	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12735691	0.83[ASN][1000 genomes]
rs12737023	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933001	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933007	0.81[EUR][1000 genomes]
rs2095669	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2152836	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2244448	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378400	0.86[ASN][1000 genomes]
rs2589577	0.80[ASN][1000 genomes]
rs2589583	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2589586	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2589589	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786598	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2786606	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2786610	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2786617	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2889895	0.80[ASN][1000 genomes]
rs35287074	0.85[EUR][1000 genomes]
rs3753873	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3767320	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3767321	0.83[ASN][1000 genomes]
rs3767323	0.83[ASN][1000 genomes]
rs3820347	0.85[ASN][1000 genomes]
rs4338357	0.85[ASN][1000 genomes]
rs4846326	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4846653	0.82[EUR][1000 genomes]
rs4846655	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6541154	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6675368	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7556280	0.82[EUR][1000 genomes]
rs9430949	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
2	chr1:220728000-220745200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:220730400-220747400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:220737800-220746400	Weak transcription	Fetal Brain Female	brain
5	chr1:220739200-220747200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:220739200-220748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:220739400-220746200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:220741600-220746800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:220741800-220745400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:220742200-220749600	Weak transcription	Aorta	Aorta
11	chr1:220743000-220743200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links