Variant report

Variant	rs2590469
Chromosome Location	chr8:34229317-34229318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2168962	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609620	0.95[ASN][1000 genomes]
rs2609633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2719311	0.83[EUR][1000 genomes]
rs2719320	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2719321	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2719322	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28404543	0.88[ASN][1000 genomes]
rs2953926	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2953929	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2953934	0.95[ASN][1000 genomes]
rs2953935	0.95[ASN][1000 genomes]
rs2959323	0.95[ASN][1000 genomes]
rs2959325	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2978837	0.96[ASN][1000 genomes]
rs4739544	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6987252	0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2590469	FGFR1	cis	parietal	SCAN
rs2590469	KIF7	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34227400-34230800	Enhancers	Fetal Intestine Large	intestine
2	chr8:34228000-34230600	Enhancers	Fetal Intestine Small	intestine
3	chr8:34228200-34229400	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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