Variant report

Variant	rs2590921
Chromosome Location	chr13:64224147-64224148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1158919	1.00[AMR][1000 genomes]
rs1373304	1.00[AMR][1000 genomes]
rs1443959	1.00[AMR][1000 genomes]
rs1550687	0.82[AFR][1000 genomes]
rs2218399	1.00[AMR][1000 genomes]
rs2587587	1.00[AMR][1000 genomes]
rs2587595	1.00[AMR][1000 genomes]
rs2590926	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039661	chr13:63736333-64287558	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv541801	chr13:63736333-64287558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1042265	chr13:63945130-64471230	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv917273	chr13:63998155-64344377	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv900312	chr13:64050360-64270259	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900313	chr13:64050360-64279866	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1035413	chr13:64115552-64348712	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv900314	chr13:64133015-64357838	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1048708	chr13:64133698-64382448	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv541805	chr13:64133698-64382448	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv900315	chr13:64164086-64241239	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1040762	chr13:64173948-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1040459	chr13:64173948-64321869	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1050067	chr13:64173948-64405310	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv1044017	chr13:64179828-64307519	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1048830	chr13:64180438-64311124	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv541806	chr13:64180438-64311124	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv524746	chr13:64184453-64343819	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv455912	chr13:64193224-64241239	Active TSS Enhancers Weak transcription Flanking Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv561912	chr13:64193224-64241239	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv561913	chr13:64194660-64241239	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv561914	chr13:64194660-64242114	Active TSS Enhancers Flanking Active TSS Weak transcription	lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1035858	chr13:64210729-64239551	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
24	nsv1053702	chr13:64212705-64242857	Enhancers Weak transcription	lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv1795561	chr13:64215750-64236589	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
26	esv1801347	chr13:64215750-64236589	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv1803972	chr13:64217694-64236589	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	nsv561916	chr13:64217694-64236589	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
29	esv1796502	chr13:64222995-64236589	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:64223200-64224400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:64223600-64224200	Enhancers	Brain Substantia Nigra	brain
3	chr13:64223800-64224200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:64224000-64224400	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links