Variant report

Variant	rs2591983
Chromosome Location	chr5:16150721-16150722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2591984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3514567	chr5:16148852-16151950	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	esv3514571	chr5:16149302-16151800	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	esv3468871	chr5:16149882-16150883	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
5	esv3514570	chr5:16149907-16150895	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	n/a
6	esv3514566	chr5:16149917-16150870	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	n/a
7	esv3468873	chr5:16149928-16150851	Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3514568	chr5:16149929-16150823	ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Genic enhancers Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv3468870	chr5:16149938-16150844	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	inside rSNPs	n/a
10	esv3468872	chr5:16149948-16150813	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	esv3514569	chr5:16149969-16150834	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
12	esv3468874	chr5:16149999-16150784	Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Enhancers Genic enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3514565	chr5:16150009-16150785	Weak transcription ZNF genes & repeats Genic enhancers Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv330082	chr5:16150013-16150779	Genic enhancers Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3468876	chr5:16150013-16150783	Genic enhancers ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3514572	chr5:16150013-16150783	ZNF genes & repeats Enhancers Genic enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv1809668	chr5:16150021-16152168	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
18	esv1809894	chr5:16150021-16152168	Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv1811534	chr5:16150021-16152168	Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv15348	chr5:16150030-16150746	Genic enhancers Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
21	esv1838286	chr5:16150721-16180167	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv1848638	chr5:16150721-16180167	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16149600-16151200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16150200-16153200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:16150600-16151200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links