The 2.0 version of rSNPBase

Variant report

Variant rs2597938
Chromosome Location chr12:11274313-11274314
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11239200-11283600 Weak transcription Fetal Thymus thymus
2 chr12:11245200-11286000 Weak transcription Ovary ovary
3 chr12:11251000-11276200 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr12:11252200-11274800 Weak transcription HSMM muscle
5 chr12:11253000-11283200 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr12:11260000-11297000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr12:11261400-11277600 Weak transcription Liver Liver
8 chr12:11262000-11274800 Weak transcription Right Ventricle heart
9 chr12:11262200-11296400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr12:11262200-11296800 Weak transcription Thymus Thymus
11 chr12:11262200-11314600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr12:11262400-11275000 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr12:11262600-11275200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr12:11262800-11318200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr12:11265000-11279600 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr12:11265400-11275600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr12:11265400-11297200 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr12:11265800-11284000 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr12:11266400-11296800 Weak transcription Primary T cells fromperipheralblood blood
20 chr12:11267200-11276600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr12:11267200-11276600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
22 chr12:11267200-11281600 Weak transcription Fetal Stomach stomach
23 chr12:11267400-11275400 Weak transcription Psoas Muscle Psoas
24 chr12:11267400-11275600 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr12:11267600-11275200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr12:11267600-11276400 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr12:11267800-11286400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr12:11268000-11276000 Weak transcription Dnd41 blood
29 chr12:11268000-11276600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr12:11268200-11274800 Weak transcription A549 lung
31 chr12:11268200-11281800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr12:11268600-11283000 Weak transcription Left Ventricle heart
33 chr12:11268600-11312600 Weak transcription Hela-S3 cervix
34 chr12:11269400-11279200 Weak transcription Primary B cells from cord blood blood
35 chr12:11270400-11276000 Weak transcription Fetal Muscle Trunk muscle
36 chr12:11270400-11278800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr12:11270400-11286000 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr12:11270400-11323200 Weak transcription Fetal Kidney kidney
39 chr12:11270600-11282000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr12:11270800-11276200 Weak transcription Primary T helper cells PMA-I stimulated --
41 chr12:11271000-11276800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr12:11271000-11283000 Weak transcription HSMMtube muscle
43 chr12:11271200-11281600 Weak transcription Cortex derived primary cultured neurospheres brain
44 chr12:11271200-11282400 Weak transcription Stomach Smooth Muscle stomach
45 chr12:11271200-11285000 Weak transcription Adipose Nuclei Adipose
46 chr12:11271400-11274600 Weak transcription Brain Germinal Matrix brain
47 chr12:11271400-11274800 Weak transcription Primary T cells from cord blood blood
48 chr12:11271400-11277400 Weak transcription Fetal Intestine Small intestine
49 chr12:11271400-11281200 Weak transcription Placenta Placenta
50 chr12:11271600-11274600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015