The 2.0 version of rSNPBase

Variant report

Variant rs2597943
Chromosome Location chr12:11269727-11269728
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11239200-11283600 Weak transcription Fetal Thymus thymus
2 chr12:11245200-11286000 Weak transcription Ovary ovary
3 chr12:11251000-11276200 Weak transcription iPS-18 Cell Line embryonic stem cell
4 chr12:11251200-11269800 Weak transcription H1 Cell Line embryonic stem cell
5 chr12:11252200-11274800 Weak transcription HSMM muscle
6 chr12:11253000-11283200 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr12:11257400-11273000 Weak transcription Fetal Heart heart
8 chr12:11258600-11272800 Weak transcription Muscle Satellite Cultured Cells --
9 chr12:11258600-11273000 Weak transcription Osteobl bone
10 chr12:11258800-11272400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr12:11260000-11272800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr12:11260000-11297000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr12:11260200-11271800 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr12:11260600-11270000 Weak transcription Fetal Kidney kidney
15 chr12:11261400-11277600 Weak transcription Liver Liver
16 chr12:11262000-11274800 Weak transcription Right Ventricle heart
17 chr12:11262200-11270000 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr12:11262200-11296400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
19 chr12:11262200-11296800 Weak transcription Thymus Thymus
20 chr12:11262200-11314600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr12:11262400-11275000 Weak transcription Primary T helper cells fromperipheralblood blood
22 chr12:11262600-11275200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr12:11262800-11318200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr12:11263000-11271000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr12:11263600-11272600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr12:11265000-11279600 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr12:11265400-11275600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr12:11265400-11297200 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr12:11265800-11284000 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr12:11266400-11296800 Weak transcription Primary T cells fromperipheralblood blood
31 chr12:11267200-11271000 Weak transcription Fetal Intestine Small intestine
32 chr12:11267200-11272800 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr12:11267200-11276600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr12:11267200-11276600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr12:11267200-11281600 Weak transcription Fetal Stomach stomach
36 chr12:11267400-11275400 Weak transcription Psoas Muscle Psoas
37 chr12:11267400-11275600 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr12:11267600-11273200 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr12:11267600-11275200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr12:11267600-11276400 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr12:11267800-11286400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr12:11268000-11276000 Weak transcription Dnd41 blood
43 chr12:11268000-11276600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr12:11268200-11274800 Weak transcription A549 lung
45 chr12:11268200-11281800 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr12:11268600-11283000 Weak transcription Left Ventricle heart
47 chr12:11268600-11312600 Weak transcription Hela-S3 cervix
48 chr12:11269200-11270400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr12:11269400-11270600 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
50 chr12:11269400-11279200 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015